rs36344288 SNP Detail

Summary

• ID
  rs36344288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35514722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGTTT TTGTTTGCTT
  GTTTGTTTTG GGTTTTGGTT TTTGTTTGTT TTTGGAAGAG GTGATATTTA GGTTAAGAGG
  ACAAACATGA ATTCATGAGC TTGGAGGCTA ACTGGTGAAG CTTACTTGGT CAAATGTAAG
  CGTACATGGA CAAAGCTACT TAAAGAAATA CAAGTGAGGG TCTGGAGTAC AGCTTTCAGA
  Y
  AGGGAAGAAA AAGAATTGTT CAACACAACA CAATGTCCCA GTAGACCAAA AGATAGAGTT
  GGAAGTGATA TAGAGTCAAA AGCATCTATC ATCAAGTTAG AGAAGGAAGT TCACTGAGAA
  AAAAAATATG CTTAAAATAA ACACTGATCC CTTCAGCTAA CTATTGAAGA TGACCAGGAT
  GGGGGTGGGC AAACCAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51601194	NES14847540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36344288					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601194	NES14847540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35514722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	1339 bp proximal
Mtpn	myotrophin	within coordinates
Rr146138	regulatory region 146138	478 bp proximal
Rr399612	regulatory region 399612	1970 bp upstream
Tssr60312	transcription start site region 60312	454 bp downstream
Tssr60313	transcription start site region 60313	1920 bp downstream
Tssr60314	transcription start site region 60314	1960 bp downstream
Tssr60315	transcription start site region 60315	1978 bp downstream