rs36345379 SNP Detail

Summary

• ID
  rs36345379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4840421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT CAAAGGTAAC TCCTGCTGGC
  Y
  GCTTGCCAGA GTTTGTCTAA GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss50908940	NES13484794	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C		C	C		C
ss319612283	CHEV_1_4760279	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs36345379					SNP	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908940	NES13484794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4840421 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	933 bp upstream
Rr407421	regulatory region 407421	1528 bp distal
Rr407422	regulatory region 407422	1635 bp distal
Rr407423	regulatory region 407423	within coordinates
Rr407424	regulatory region 407424	122 bp distal
Tssr5799	transcription start site region 5799	896 bp upstream