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rs36346769 SNP Detail
Summary
  • ID
    rs36346769
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:10697284 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTCAGCCT GATTGTGCAG
    ACATCTGTGG GCAAGCCCAG TAATTCCCTG CAAGGCAATG TGCCTGTGCC ATTATTTCCA
    CAGGACTCAA CCACTGGCTT TATTTAGCTT GGGCATTCCC CTGCTCAATT CAGAGTAAGT
    CAGTGAATCA TTTTCTCCAT CATCTATCTC TGGATCATCA CACGAAGGGC CTTAATCACC
    R
    AGGACCAAAC ACTCAGTAAG TTATATCCTT CTTGTCCTAG CATTTGAAAG ATTAGATATA
    AAAGGCAGGT TGATTTTATT AATTCTCTTT TCTCAAGCTA ATGTAATTCT CAATCAGAGC
    TTAACCTCCT ATAATTATAT CCTTAATCAA AATACTTTGA TAATTCCTAT AAAGCCTTAT
    TTGTAATATA AAAACATTAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51581071 NES14611438 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36346769 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51581071 NES14611438 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:10697284 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52214 predicted gene, 52214 within coordinates
Rai14 retinoic acid induced 14 within coordinates
Rr301959 regulatory region 301959 1117 bp proximal
Rr306144 regulatory region 306144 1317 bp proximal
Rr312694 regulatory region 312694 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory