rs36348179 SNP Detail

Summary

• ID
  rs36348179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:54442774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGCTG CAGGTTGTGT
  CTATTGCTCC TGCTGACAAG GCTACATTGC AGGGTGGAAG GTGCCTGTCG CCTGGGGACT
  CACATTCAAC GACAGACTGT CTTTAGTTTG CTCACTTGAG CCAGAACCAA CCACAGACTG
  CACCTTGAAG GCCTCAGAGT CAGTCAAAGA GCTCAGAAGG TTCTCTATCA AGGGCTGAAA
  R
  TCTGTCTCAA TTTAGAACTC TAGGCCACTG TCTGAAAGGA TCCTGAAGCA GATCCAATTC
  AGGCTGCTTG GTTACTGTGA GGGTACAGGT CCCAGTTAAT GGTGTGTCCT CTGTCCAGGC
  AAACAGAGCA GCTACTCAGG GACAAAGCCC TCGGTTCCTT CCTCATCCGC CTCAGTGACC
  GGGCTGTCGG CTACATCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52018456	NES15032651	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36348179					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018456	NES15032651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54442774 () rs orientation: forward

Symbol	Name	Function Class
Gm54935	predicted gene, 54935	1695 bp upstream
Gm69041	predicted gene, 69041	within coordinates
Rr679144	regulatory region 679144	1334 bp distal
Rr679145	regulatory region 679145	715 bp proximal
Rr679146	regulatory region 679146	1611 bp proximal
Sh2d7	SH2 domain containing 7	Intron
Tssr85159	transcription start site region 85159	1363 bp downstream