rs36348811 SNP Detail

Summary

• ID
  rs36348811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108638094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCACCT CCTACCTGCC
  TGCCCAAAGC TCCAGGGCTG GAGCACGGAG ACCTGTCAGG GTAAGTGTGT GCTGTGATCC
  CTTCAAGTCT CCACTCCTAA CCTTGTGTTC CGCGACACTC TCAACTTGGG GCATCTCTGA
  GAGTATAGGG GGCTTCTTTC ACGTCTAGGG CTCCTGCAGC TAGTACGCAC TCGGGAGTCA
  Y
  GGCTTTTTCT GACCTCTCTC CCTGCAGGAT GGATTTTGCC CACATGTACC AAGTGTACAA
  GTCCAGGCGG GGAATAAAAC GGAGCGAAGA CAGCAAGGTA GGTGCATCCC TGGGAACCTC
  ATTCCTTAGC CCCTCGTGTG CGCTGAGTTT CCAAGAAAAG TTTGCTTGTT TCAAGGTTGG
  CTGGGGGGTT CAAGATGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51810830	NES14774566	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36348811					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810830	NES14774566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108638094 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	199 bp upstream
4833447P13Rik	RIKEN cDNA 4833447P13 gene	1593 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	1540 bp downstream
Rr399817	regulatory region 399817	449 bp upstream
Rr636155	regulatory region 636155	1196 bp distal
Rr636156	regulatory region 636156	249 bp distal
Rr636157	regulatory region 636157	388 bp distal
Rr636158	regulatory region 636158	within coordinates
Rr636159	regulatory region 636159	470 bp proximal
Tssr58071	transcription start site region 58071	1466 bp downstream
Tssr58072	transcription start site region 58072	687 bp downstream
Tssr58073	transcription start site region 58073	636 bp downstream
Tssr58074	transcription start site region 58074	599 bp downstream
Tssr58075	transcription start site region 58075	451 bp downstream
Tssr58076	transcription start site region 58076	346 bp downstream
Tssr58077	transcription start site region 58077	267 bp downstream
Tssr58078	transcription start site region 58078	614 bp upstream
Tssr58079	transcription start site region 58079	857 bp upstream
Tssr58080	transcription start site region 58080	1206 bp upstream
Tssr58081	transcription start site region 58081	1637 bp upstream
Tssr58082	transcription start site region 58082	1986 bp upstream
Tssr62390	transcription start site region 62390	1711 bp upstream
Tssr62391	transcription start site region 62391	1310 bp upstream