rs36349193 SNP Detail

Summary

• ID
  rs36349193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41358220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAAGCCA TGCAGATAGA
  AGAGCAAACT GTGCCCCTCC TTTCACAGGA TGGTCAGGGG CCCTGGCGGG GGAAATCTTA
  GTGACATTTG GACAGGCTGT AGCATCGCAG TGACACTAGA AAGATTTCAC CATGCCTGCC
  AGGTGCCTCC TTCCCCAAAG CATAGATCAT TTCAAAAGGG AAAGTGTGAA GAAAGTACCC
  R
  TAGTGGGAGG CTATGTGAGG GTGTGCCAAG GAGCTGGCTG CAAAACCAAC TAAACTATGG
  CATAGAAAGA GCAAGATCAG AAGTCCACAG CCACACAGGA CAGTGCAGGA AAAATGAGTC
  CAGTCCAACA GATCTCAAGC CAGCTCCTTC CCCTTGGTCT CTGCAATGGA CCGCAAGGGA
  CCCCAAGAGT CACTATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50825183	NES13542286	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36349193					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50825183	NES13542286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41358220 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr547618	regulatory region 547618	1454 bp distal
Rr547619	regulatory region 547619	within coordinates
Rr547620	regulatory region 547620	1668 bp proximal
Tssr159304	transcription start site region 159304	426 bp downstream
Tssr159305	transcription start site region 159305	467 bp downstream