rs36349868 SNP Detail

Summary

• ID
  rs36349868
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15895894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGGGCTG GGTACAAAGG AAGCAGCTGC CCTCCCTGGA
  CACAAGATGA GCAGAGGCTG CAGTGGCCCA TCGAGCTGCT GTGCTGGGGG TAGCATGAGC
  R
  ACACAGACAC ATGGAGTGCC TGAGAGCAGC ACTAAAGGAT GAGCGAGCAC ACTAATCTTA
  CCCTCCAGGT CCCACCAGCT CCTGTAGCCA CGGGCTCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51880834	NES14893708	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	A	G		A	A	G	A		G
ss148378215	ENSMUSSNP337736	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322108797	CHEV_7_16747318	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36349868					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880834	NES14893708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15895894 () rs orientation: forward

Symbol	Name	Function Class
Rr155078	regulatory region 155078	294 bp distal
Rr160786	regulatory region 160786	107 bp proximal
Rr164335	regulatory region 164335	950 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	906 bp downstream
Tssr64587	transcription start site region 64587	1775 bp downstream
Tssr64588	transcription start site region 64588	1759 bp downstream