rs36350726 SNP Detail

Summary

• ID
  rs36350726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116694163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGGCTG TTCCAAGAAA
  GTCACCCCCC CCTCACCTCA CACCTGCTGG GGGTCCAAAG AGGAGACAGG GCACACGCAG
  ATCTGGGCTA GGGAAGAAGA GTAGAGACGG AGACAGAGAT AGAACAAATG TGTTTCTAAA
  TCTCCACTGG TAGCCACTTA GCAAATGAGT TCCAAGCTCT TTCCTTCTGT GTATAGGTGG
  R
  TTGAAAAGAT TTCCGAATCT GGTAGATTTG AACTCTGACC TTCTTGGTTC AGATGGCAGC
  ACGTGGAGAC CCTCCTCTGT TCCTTACAAG CATCCGGGAT ATGAGATGTG AGAAATCACG
  GTGTATGCTG TGTGAACAAT TAACTGGGTG ACCTTGGGGG AAACCCAGAG GTGTCTGGGA
  GCCTCAGTAA CTGTGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51859013	NES14881835	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36350726					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859013	NES14881835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116694163 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	673 bp proximal
Rr145611	regulatory region 145611	162 bp distal
Rr147145	regulatory region 147145	1964 bp distal
Rr147146	regulatory region 147146	1439 bp proximal
Tmem72	transmembrane protein 72	220 bp upstream
Tssr62610	transcription start site region 62610	540 bp upstream
Tssr62611	transcription start site region 62611	468 bp upstream
Tssr62612	transcription start site region 62612	432 bp upstream
Tssr62613	transcription start site region 62613	279 bp upstream