rs36353216 SNP Detail

Summary

• ID
  rs36353216
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60960108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCAGTG CAATCTTCCA
  GAGGGCCTCT GGGTAGGGGA AGGGGGTTCT CTACCAGGGG TCGTGAGTCA GTCCCTCTTT
  CCATGCTGTG CCGGCCTCAA GTCTGAGCTT TGCTTTTCCA CAGGAATGCA CAAGTGAGGC
  CCCAAGGGTC ACAGCTGTCA CAGCCTCTGA TGCTGCTCAT CGCGGCTTTG TCGCCTGACC
  S
  GAGGACCTCA AGAGCGCGCT CCTTACATGC ACCTGTGCGT GGTTTTGACA GCTGTGGAAG
  GCGCATCTCC TTTCGACCCA ACCTTTAACT TTTTGTTTCT GACCTTTTTG TTGTGCCTGT
  GGTGACAACA TGTGTTGCTT AATGAGCCAT TTTAAAGTGC ACACAGCTCA GGGGCATGTA
  GTATGTTCAC CGTGTGTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52025275	NES15042135	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36353216					SNP	G	C	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025275	NES15042135	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60960108 () rs orientation: forward

Symbol	Name	Function Class
Gm33699	predicted gene, 33699	within coordinates
Gm39348	predicted gene, 39348	within coordinates
Rr401422	regulatory region 401422	1522 bp upstream
Rr680430	regulatory region 680430	within coordinates
Rr680431	regulatory region 680431	1162 bp proximal
Tssr85498	transcription start site region 85498	1811 bp upstream