rs36353643 SNP Detail

Summary

• ID
  rs36353643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51728910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGCACTC ACCAGGCCGT
  CGATCTGCAC CTGCTTCACG GCCGAATCTC CGGAGCCGCC TTTGCCTTTG CCCTTCCCCA
  CCGCGCCGCC AGCAGAACCG GAGGAGGTGG CGGTAGAGCC GGTGCCTTCC TTGCGCGACG
  CCATGTTTCC AGCCAGACAG GAAGAAAGAG AAGCGTGAGG CGCCGGAAGC GGAACTACGA
  R
  GCTCCGTGAC GCTATGTTAA GGCTTTGGGG GTGGGGGGGG CGGTGTCTGG AAGCAGGCTG
  GGCAGGGCCC CGCCTCCTCG GTGGTGTTTC TCCCTCCCCC AACCCTCCCT GAGATTGTGG
  GAATCCTCTG CGCACGCGCG GAGTTTGGCC CGTACTGCTC AACCCACAGT AATTGATTAG
  GGTCACTCTG ACTACAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51665638	NES14579646	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36353643					SNP	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665638	NES14579646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51728910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	within coordinates
Eif3h	eukaryotic translation initiation factor 3, subunit H	9 bp upstream
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	within coordinates
Tssr134286	transcription start site region 134286	40 bp upstream
Tssr134287	transcription start site region 134287	within coordinates