rs36354824 SNP Detail

Summary

• ID
  rs36354824
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4429079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGCTTA AGCGCCCATG
  GCAATGTAAG CCCTGTGGGT ACAACACAAA ACGTAATGAA GAATCAGCAC CAACAATAAA
  TAAAAAGTCA AAAAGCCATT TTCCAAGGCA GTGGCTCAGA CATTGGCCTG TTGGAATCAT
  GCACCTCTCC AAGAATCCAG GAGCATTAAT TGTGCAATTC AGGAGTGAAC TGACGGTGTG
  S
  CGATGTACCA AGGAAATACT CTAGATGGGA TGTCTAGTCT AGATTGAAGG CAGCAAATAG
  AAGGTAACAT TGTCCAGAGG GAATTCATGG AAAGCTCTGA TGCCAGATGC AGAGTAGCAG
  GGATGCCCTC GGGAGGAAAG GGAAACCAGT GCAACACAGA GCCACCTCAC AAAAGCAAGA
  TCAGCTGTGT GAACACCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51224838	NES14300836	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36354824					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51224838	NES14300836	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4429079 () rs orientation: forward

Symbol	Name	Function Class
Rp1	retinitis pigmentosa 1 (human)	within coordinates
Tssr10872	transcription start site region 10872	1381 bp downstream
Tssr10873	transcription start site region 10873	1400 bp downstream