rs36355833 SNP Detail

Summary

• ID
  rs36355833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAAGCAAA GTAGAATCAT
  TATCACAGGA AGCAAAGGCA ACCTAAATGT GCAAGCAATA GGAAAATGTG GAAGCCCATC
  ATAGTACTTG GACTTCATCT GCTTTTGTGC CTTCACTAAG TTTTTAAACA TGAGCTGGCT
  CCTATCTGCC ATTGGCAAGG CTGGGCACTA CCCACAACCT ACTTCAAGGA CCTCTATACC
  R
  TGAGATTACA CACATACATC AAAATTTGGG AAAAGTTCTA CCAAGCTGAG AGCTGATCAC
  CCCACTCTTA GGTGCTTATC TCTGTACACC AGAAACCTTA AGAAGCAACC AGTATTGAGA
  GACTCATTTA TGAAAGTCTA AAACTGGATA CAACCAAAAT GTCCACCAAC AGTTAAATTA
  TGACATGTTC ACAATTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676626	NES14820459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		A	G	G	G		G
ss321815813	CHEV_6_70677492	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36355833					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676626	NES14820459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704482 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1715 bp upstream
Gm68839	predicted gene, 68839	532 bp upstream
Igk	immunoglobulin kappa chain complex	744 bp downstream
Igkc	immunoglobulin kappa constant	744 bp downstream
Rr158	regulatory region 158	1547 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399685	regulatory region 399685	1651 bp downstream
Rr399686	regulatory region 399686	687 bp downstream
Tssr1880	transcription start site region 1880	647 bp downstream
Tssr56956	transcription start site region 56956	1665 bp downstream
Tssr56957	transcription start site region 56957	1026 bp downstream
Tssr56958	transcription start site region 56958	1010 bp downstream
Tssr56959	transcription start site region 56959	992 bp downstream
Tssr56960	transcription start site region 56960	977 bp downstream
Tssr56961	transcription start site region 56961	961 bp downstream
Tssr56962	transcription start site region 56962	949 bp downstream
Tssr56963	transcription start site region 56963	902 bp downstream
Tssr56964	transcription start site region 56964	891 bp downstream
Tssr56965	transcription start site region 56965	879 bp downstream
Tssr56966	transcription start site region 56966	871 bp downstream
Tssr56967	transcription start site region 56967	851 bp downstream
Tssr56968	transcription start site region 56968	821 bp downstream
Tssr56969	transcription start site region 56969	797 bp downstream
Tssr56970	transcription start site region 56970	778 bp downstream
Tssr56971	transcription start site region 56971	766 bp downstream
Tssr56972	transcription start site region 56972	707 bp downstream
Tssr56973	transcription start site region 56973	696 bp downstream
Tssr56974	transcription start site region 56974	666 bp downstream
Tssr56975	transcription start site region 56975	629 bp downstream
Tssr61321	transcription start site region 61321	989 bp upstream
Tssr61322	transcription start site region 61322	841 bp upstream
Tssr61323	transcription start site region 61323	760 bp upstream
Tssr61324	transcription start site region 61324	683 bp upstream
Tssr61325	transcription start site region 61325	650 bp upstream
Tssr61326	transcription start site region 61326	637 bp upstream
Tssr61327	transcription start site region 61327	611 bp upstream
Tssr61328	transcription start site region 61328	533 bp upstream