rs36355952 SNP Detail

Summary

• ID
  rs36355952
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49023058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTCTTG TTTAAGATAA
  TAATGGATAC ACATTTTTAT TTTGTTATCA TAGCATTTGT CTATATTATT TAAAAGTCCT
  TAAGTTGTTT TAATGACTGC ATAATACATC AATGTGTGGA TCTAAAACAA CATAGATACT
  GTTCTTCTCT GTCATGGTCT ACATGTCTGT TTTCTAAAAA CCATAAAAGG TTTCACTTTG
  M
  TGTATTATTA GTGAAGTGTT ATTTTAAGAG GAACAAAATT GGCTCATTAT TAACAAGGCT
  GCTGAATTCT CAGTATATTA CCAGAGGGCC ACGTCAATGG ATGAGTGGGA GAATACAAGC
  CCAGCATGTA GACATTAAGC AAAATACACA CACACCCCAC ACACAAATAA CATACACACA
  CACCAGACAT ACACATACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658485	NES14824357	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36355952					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658485	NES14824357	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49023058 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	225 bp proximal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	115 bp proximal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	807 bp downstream
Tssr56320	transcription start site region 56320	767 bp downstream
Tssr56321	transcription start site region 56321	753 bp downstream
Tssr56322	transcription start site region 56322	735 bp downstream
Tssr56323	transcription start site region 56323	699 bp downstream
Tssr56324	transcription start site region 56324	669 bp downstream
Tssr56325	transcription start site region 56325	513 bp downstream
Tssr56326	transcription start site region 56326	498 bp downstream
Tssr56327	transcription start site region 56327	444 bp downstream
Tssr56328	transcription start site region 56328	366 bp downstream
Tssr56329	transcription start site region 56329	290 bp downstream
Tssr56330	transcription start site region 56330	119 bp downstream
Tssr56331	transcription start site region 56331	74 bp downstream
Tssr56332	transcription start site region 56332	1 bp downstream
Tssr56333	transcription start site region 56333	26 bp upstream
Tssr56334	transcription start site region 56334	43 bp upstream
Tssr56335	transcription start site region 56335	53 bp upstream
Tssr56336	transcription start site region 56336	83 bp upstream
Tssr56337	transcription start site region 56337	98 bp upstream
Tssr56338	transcription start site region 56338	121 bp upstream
Tssr56339	transcription start site region 56339	134 bp upstream
Tssr56340	transcription start site region 56340	326 bp upstream
Tssr56341	transcription start site region 56341	586 bp upstream
Tssr56342	transcription start site region 56342	618 bp upstream
Tssr56343	transcription start site region 56343	1168 bp upstream
Tssr56344	transcription start site region 56344	1182 bp upstream
Tssr56345	transcription start site region 56345	1200 bp upstream
Tssr56346	transcription start site region 56346	1237 bp upstream
Tssr56347	transcription start site region 56347	1275 bp upstream
Tssr56348	transcription start site region 56348	1301 bp upstream
Tssr56349	transcription start site region 56349	1624 bp upstream
Tssr56350	transcription start site region 56350	1651 bp upstream
Tssr56351	transcription start site region 56351	1681 bp upstream
Tssr56352	transcription start site region 56352	1694 bp upstream
Tssr56353	transcription start site region 56353	1763 bp upstream
Tssr56354	transcription start site region 56354	1778 bp upstream
Tssr56355	transcription start site region 56355	1803 bp upstream
Tssr56356	transcription start site region 56356	1821 bp upstream
Tssr56357	transcription start site region 56357	1833 bp upstream
Tssr56358	transcription start site region 56358	1851 bp upstream
Tssr56359	transcription start site region 56359	1866 bp upstream
Tssr56360	transcription start site region 56360	1903 bp upstream
Tssr60845	transcription start site region 60845	1975 bp upstream
Tssr60846	transcription start site region 60846	732 bp upstream
Tssr60847	transcription start site region 60847	649 bp upstream
Tssr60848	transcription start site region 60848	211 bp downstream
Tssr60849	transcription start site region 60849	1205 bp downstream
Tssr60850	transcription start site region 60850	1260 bp downstream
Tssr60851	transcription start site region 60851	1730 bp downstream
Tssr60852	transcription start site region 60852	1773 bp downstream
Tssr60853	transcription start site region 60853	1783 bp downstream
Tssr60854	transcription start site region 60854	1802 bp downstream
Tssr60855	transcription start site region 60855	1835 bp downstream
Tssr60856	transcription start site region 60856	1873 bp downstream
Tssr60857	transcription start site region 60857	1902 bp downstream