rs36356021 SNP Detail

Summary

• ID
  rs36356021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74695467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAATCTAT ATAGTCTTGA
  AGAGTTCCTA GTACTTGGGT AGACTTTCAT ACATATTTGT TGAATTCAGG GAAGATTTTT
  ACGAGGAAAT TGTACACAGA AGTTGAAACA ATTTAAGAAT TTCCTACAGG GGAACAGGGC
  ATAGCAAACA AGAGTTCAAA ACTAAGAAGA ATTAAAACCC TCGTGATCTA CTCAGGTAAC
  R
  AGGAATCAAG TGATACAGAT AAAGTCTAAC GCTCGACCCT CCTCATCAAT CACTAATTAA
  GAAAATGCCC TGCAGGTTTG TCTACAGCCC GATCTTATGG AGGTATTTTC ACAACCAAGG
  TTCCCTCCAC TCAGATGACC AGTTTAAGTA ACTTAAATAA AACTTTCCGG CCACAGAGTC
  TCCCTGTATA GCCCAGGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss51157134	NES13841835	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs36356021					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51157134	NES13841835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74695467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	503 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	643 bp upstream
Rr399136	regulatory region 399136	394 bp upstream
Rr613306	regulatory region 613306	153 bp proximal
Rr613307	regulatory region 613307	686 bp proximal
Tssr46674	transcription start site region 46674	660 bp upstream
Tssr46675	transcription start site region 46675	729 bp upstream
Tssr46676	transcription start site region 46676	835 bp upstream