rs36357742 SNP Detail

Summary

• ID
  rs36357742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131671062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGAACTC TCATTTGGTA GATTCCCACA
  CTGCTTTCCC ATTGCATTGG TGGCCAAGGG ACCCACAGCT CTGCTCCCAA AGGCATCTGG
  GAACATGGTC ATTGGCTCTG GTTCCTGGAA GGGATGGTAC AGAGAGTTGA TGGCTTCCAG
  R
  ACACCTTTCC TAAATTTGCT GTAGGTCCAG TTTCTTAAGC TTCTTTACTC TAGTGTTTCT
  GAGCCTCATG GCATCTCTGA TATTTCTGAG CACTGCACAG GGACGGTCTT CACAATGATT
  TAAGGTCGGG GATGGAGCTG GAAAGCAAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51365848	NES14471111	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	A	A	A		A	A		G
ss319975128	CHEV_1_133639901	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36357742					SNP	G	A	G	A	G	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365848	NES14471111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131671062 () rs orientation: forward

Symbol	Name	Function Class
Rr19210	regulatory region 19210	1862 bp distal
Rr28486	regulatory region 28486	738 bp proximal
Slc26a9	solute carrier family 26, member 9	698 bp upstream
Tssr8660	transcription start site region 8660	687 bp upstream
Tssr8661	transcription start site region 8661	854 bp upstream