rs36358075 SNP Detail

Summary

• ID
  rs36358075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:27836011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAATGCG CTGTGTCACA
  GCAGCAGAAA GGAAAATAGC CCACTGCTAC CCAGTGATGG TGGTTTAAAG AGGCTGGCAG
  CCCTCTGCCG GATTTGTCAC CGTTTTGGTG CTTGTAGGTC TTGACTGGTT CTGCCCATAG
  CCTCCTGACT CTTGCTTCCT CATGTCATGA ACATGAATCC CACTGTTTCA CTGGCTTCCT
  R
  CAGCTGCCCC TTGCTGCCAC CAACCCTGCC AGGTTCCTTC CTCACACTGG CTTCATTCTT
  GTAATGAGCC TGCCGTTCTG CCAGCCACTG TCAGAGGCAC TGGAGATAAA ACCATGAGGT
  GGGCTCCCAG TGGTTCTGAT AGGTGGAGCA TGTGGCAAAC CTGCACACTG TGGGAGAGGG
  CCAGGAGCTG TGGGAACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887449	NES14907498	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	A	G	A	G	G	G
ss148632126	ENSMUSSNP320074	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36358075					SNP	G	G	A	A	A	A	A	G	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887449	NES14907498	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27836011 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	Intron
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1145 bp proximal
Rr644171	regulatory region 644171	1226 bp proximal
Tssr65385	transcription start site region 65385	1528 bp downstream
Tssr65386	transcription start site region 65386	518 bp upstream
Tssr65387	transcription start site region 65387	847 bp upstream
Tssr65388	transcription start site region 65388	944 bp upstream
Tssr65389	transcription start site region 65389	1000 bp upstream
Tssr71448	transcription start site region 71448	512 bp downstream
Tssr71449	transcription start site region 71449	522 bp downstream
Tssr71450	transcription start site region 71450	539 bp downstream
Tssr71451	transcription start site region 71451	932 bp downstream