rs36358154 SNP Detail

Summary

• ID
  rs36358154
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47954880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGAGC CCGTTTTGTA
  TAAGCAGGTA GCGTGTCAAC ACTGAAGTCC ATTTCAACCA ATGTGACCAC GATGTCCAAC
  AGTGTGGGTT TGGTTCTGGC TGTGTGTTCG CAGTATGACT TGGCACCTCT CCGGATTTCT
  GAGATGTAGC TAAACAGCAT TTCCCTTAAA CCCCGCCTCT TTCAGCAAGG AGCTCACAAC
  K
  ACTTGCAGGG CCTTCCTCTT GGCCTGATGG TAGTTATCAG CAGGATTAGT GGTCTCATTC
  TGGAGCCACA AGGCCCTGCC TCCATGTCAG CCATCTTGCT CTCAAGGAAT GTGAGTCTCT
  GATATTCTTT TCATTCCTCT GTTGTTTTGT TCTGTGGTTT TGTACTTTTT GTTGTTAGAA
  TCATTCAGGA TTGAATGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51246478	NES14286109	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36358154					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246478	NES14286109	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47954880 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	within coordinates
Rr371240	regulatory region 371240	21 bp downstream
Tssr6618	transcription start site region 6618	1717 bp upstream