rs36358212 SNP Detail

Summary

• ID
  rs36358212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTTGAA CTCATAATCC
  TCCTCCTCCT GTCTTCCAAA GACTGGAACA GTTGTTTCCA ACTGTGATGA CAAGAGGAGG
  CACTTGCCTT TGTTACCTTG GCCTGTTCCA GGTAAGAGGG TTCTAGGCAC ACAGGCATGC
  TAACAGGCCA TAGAGTCCTT TCTCCTTCAG TGAGCATCTG AAATCACTGG TAAGAAATGG
  R
  CCTCATCATG TCACCCAGGA TAAAAAATTA AAATAAAATA AAATAAAATA AAATAAAATA
  AAGGTGGGGA GGGGGCAGAA CCTGAGTAGA CACAGTGTGA CCAGGACAAT TCACAAAGCA
  GATTTCAAAA GTCCTGTGTG GCCTGAGATC TTGTCCAGTC TGACTTATGT CCCCAGTACC
  TAGTCAGTGC CTGGGATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51366998	NES14473904	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs36358212					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366998	NES14473904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564713 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1339 bp upstream
Rr12195	regulatory region 12195	488 bp proximal
Rr28482	regulatory region 28482	887 bp proximal
Rr366988	regulatory region 366988	1239 bp upstream
Tssr8635	transcription start site region 8635	1295 bp upstream
Tssr8636	transcription start site region 8636	1331 bp upstream
Tssr8637	transcription start site region 8637	1379 bp upstream
Tssr8638	transcription start site region 8638	1413 bp upstream
Tssr8639	transcription start site region 8639	1465 bp upstream
Tssr8640	transcription start site region 8640	1510 bp upstream