rs36358625 SNP Detail

Summary

• ID
  rs36358625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151996880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTTTCC TTCAACATTC
  AATAGTTAAA GTTCAAGAGC AGCTTGAATG AACATGGGCG TGATCCTGTC TCAGCAAACA
  AACAAACAGA CAAACAAACA AAGGAACAGA AGAGCCACGC GCTAGGCTGG AGGGCTGGGC
  TGGAGAGCTG GCCTGAGGCT AACGCTAAGG CTAGCACTAC TGCACCAGCA GAGTCTCCAG
  Y
  GGGGAACCTG GCAGTTCTGG TCTCCGGGGC ATTCACACTC ATATGTGCAT TCCCACACTT
  CATTAAAAAT AACATCTTTG GCCAGGCGGT GGTGGCGCAC GCCTTTAATC CCAGCACTTG
  GGAGGCAGAG ACAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTAAGTTCC
  AGGACAGTCA GGGCTACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51060100	NES13425206	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	C	T	T	T		C	T	T	C		C
ss136101807	ENSMUSSNP2572190	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321028600	CHEV_3_151954207	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36358625					SNP	C	C	C	T	C	C	C	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060100	NES13425206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151996880 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	912 bp downstream