rs36359157 SNP Detail

Summary

• ID
  rs36359157
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65938234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGCTCC AACAAAGCCT
  CAGATTCTTA ATAGTCACTC CCTATGACCC TGTGTGGGCC ATTATCATCA CACACACACA
  CACACACACA CACACACACA CAGAGGGAGA GAGAGAGAGA GAATGACTTG TAACTCTGCT
  ATCCTAAGAT CACCTTTGGG TGTGCCTTGG ACCACCTCCT GTGCTTATAG TTTGCCAAAG
  K
  TCTTCTTGCA GTTGACATCT TCTCACTCAA CATGCTTAAT ATTTGATACT AAAGTTGTTT
  ACTCGCTATT TGAAATAGTG GAGTGTAATC TGCCATTTTC TACCTTTTCC TCATTATTAG
  AAATAAGACC AGTATAAATA TCTGTGGACT CCAATTTCCT ATCTGTCGCT GTTTCTGATG
  AATTCTTGGA GCAGGAACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50440840	NES13452776	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36359157					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50440840	NES13452776	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65938234 () rs orientation: forward

Symbol	Name	Function Class
Rr405702	regulatory region 405702	1764 bp downstream
Rr539618	regulatory region 539618	1620 bp distal
Rr539619	regulatory region 539619	236 bp proximal
Sec11c	SEC11 homolog C, signal peptidase complex subunit	within coordinates
Tssr151701	transcription start site region 151701	1564 bp downstream
Tssr151702	transcription start site region 151702	963 bp upstream