rs36359414 SNP Detail

Summary

• ID
  rs36359414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29231899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGAATC AGAGCAGCAC
  CAGACCCCCC AAGAGTATTA ATGCTAAGTT GTTTGACCCA ACAAGGAGTA TTTCCTTGGT
  TTAAAAATAA TAAATAAATT GCTAACTTTC AGGATTCCTC AAGTGGAGAT AGTCTGGGAA
  CATTTTCATT TGGTTGCAGC TGGCTTTTCT GATAACAGTT TTCAATGCAA AGCCTTAGTT
  Y
  ATAATGGCAT AATGTCCTGC TTCTAATAAT GCCTGTATGA CGTCTGCTAG GTTCTTCTAA
  GAATGCCTGC ATGCTGTCTG TGAGGTTCAT TCACATTGTA ATTACTCCTC TTGTGTACCT
  GCCTCTCTGG ACACTTCATA GTTTTTATTT TCTTCTGCAC AGGGCTCTTA CCACTACATT
  TTTTGATAAT CTTTTTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753205	NES13566076	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36359414					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753205	NES13566076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29231899 () rs orientation: forward

Symbol	Name	Function Class
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	353 bp downstream
Tssr155787	transcription start site region 155787	1909 bp downstream