rs36360522 SNP Detail

Summary

• ID
  rs36360522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113366849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCATG ACCAACAGCT
  AGGCCCACAC CCACCTGAAG ACTCCAGTCA CCTCCTCCTC CATCCTCACA CTCCCTGCTT
  AGTAGGTCTA TAGGCTCCCC AGATATCTTT TCCTTTTTCT TTCTTTCTTT CTTTCTTTCT
  TTTTTTTTTT TTTTTTTTAA ACAAGCATTA GCTGGCTGTC CCCAGGCAGG ACCCTGGGGA
  R
  AATTACTATA TTTTACCTAG GGTCTCCTCC AGAGCCCTAA GTCTGCTTGG TGCCTGATGG
  GGAAGAGCAG ATCACTGGAG AACTTGGCGG AAGAACTGGG CTTCCAGCTG CTGCCTTCCT
  GGTTCCCCCA GAGAGTTGCG AGAGGAAATG GTTGGGAGCA CTGGGAGAAA GTTTGGGGCA
  GTACCAGACC CAGCGACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss50460401	NES14119733	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs36360522					SNP	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460401	NES14119733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113366849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	589 bp distal
Rr653859	regulatory region 653859	1428 bp distal
Rr653860	regulatory region 653860	77 bp proximal
Rr653861	regulatory region 653861	1040 bp proximal
Rr653862	regulatory region 653862	1663 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68625	transcription start site region 68625	1817 bp downstream
Tssr68626	transcription start site region 68626	1765 bp downstream
Tssr68627	transcription start site region 68627	1701 bp downstream
Tssr68628	transcription start site region 68628	1573 bp downstream
Tssr68629	transcription start site region 68629	1549 bp downstream
Tssr68630	transcription start site region 68630	1514 bp downstream
Tssr68631	transcription start site region 68631	1413 bp downstream
Tssr68632	transcription start site region 68632	1357 bp downstream