rs36360530 SNP Detail

Summary

• ID
  rs36360530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131015226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAAAGCA AGGGTTCCTA
  CAGCTGGGGT TGGGGACAGG TCCCAGCAGA CGGACAGGTT GCCTGCCATG GTAGAAGACA
  TCCTCCGCTC CCTGTGGTCA TTCAGCTCTA ATCCCCAGCA GCCTGGCCTG GGCCAGCAGC
  CTAGGACTTC AAGGCCATAC CTTCTTAGGA AACAATATTT TCCCGTCACA GACTCAGAGG
  R
  AAACTGCCCA GGAAGAGCAG CTTGGCCCGA GCCTTTGAAC ATCCTTCATG CAAAAGTGCA
  AAATAAACAA GGACCTCTGG GCCCAGGCCC AGGCCCGACT CCAGTCCGGT TCCTCTCATT
  AGGAAGGCCT TGCCTCTTTT AGCCCTTTGA TCCTCCCGTG TGAAGGACTG ACAGGTTGCT
  CAGTTCATAA CAAAGATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51634235	NES14648959	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36360530					SNP	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634235	NES14648959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131015226 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Rr585299	regulatory region 585299	1837 bp distal
Rr585300	regulatory region 585300	1793 bp distal
Tssr31723	transcription start site region 31723	1214 bp upstream