rs36361811 SNP Detail

Summary

• ID
  rs36361811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27860650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGACTGTT TTGTGATGGT TTGGGTTTTT TTTTTTTTCT
  TCCAAAGTTT TCAACGTTTT ATGGTTTTCT TTCAAACTTT TATTCTTTTA AGTAATCTAA
  Y
  GTTAGGACAC TTGTAAGCAA GTGTGTGGAG GAGTACCCTT TCCTGGGGCT CTTCCACGGA
  AGCCACGCCC ATTTTACCAC CTTCTGTTTG TGTGTGTGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887354	NES14907129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36361811					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887354	NES14907129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27860650 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr380562	regulatory region 380562	83 bp upstream
Tssr65436	transcription start site region 65436	1794 bp downstream
Tssr65437	transcription start site region 65437	1731 bp downstream
Tssr65438	transcription start site region 65438	58 bp downstream
Tssr65439	transcription start site region 65439	1498 bp upstream
Tssr65440	transcription start site region 65440	1554 bp upstream
Tssr65441	transcription start site region 65441	1639 bp upstream