rs36362385 SNP Detail

Summary

• ID
  rs36362385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:59676999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCACAAA CAAGGCACGT
  ATTCTGACTG GGCTATGGTT CCAGCCCAGA ATATGCTTGA CATATACCAC TAACTGTGAT
  ATGCTTCAGA ACACCAAAAT GTTCTTAGAA ACTTGAAAAT CTGTTAGCCA AAAAGAAGTA
  TGTATCACAT TGGCAATGAG ACTCACCAGA AATGCAAACT GTTAAAAGGG AAACATAAGC
  Y
  ATACACTGTA CTTCAGCCAG GCAACCTTTC CACTGTAAAA TTAATACTAC AGATATCCAA
  GTGCCACAAA GAGACATTGC CAAGCTGCCT TCCACCTTAG ATTCTAGTAA CTTCCACCTC
  AGTACACTCA CTCAGCCTGA CACCTCAGGA AAGGGCAGGT GGGGACAGGA GGACCAGTAG
  CTCAAAGCCA TCCTGGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51516785	NES14634633	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36362385					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516785	NES14634633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59676999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cab39l	calcium binding protein 39-like			1401 bp upstream
Cpgi6560	CpG island 6560			1022 bp proximal
Gm45935	predicted gene, 45935			Intron
Rr404137	regulatory region 404137			1207 bp upstream
Rr493048	regulatory region 493048			642 bp distal
Rr493049	regulatory region 493049			397 bp proximal
Rr493050	regulatory region 493050			1315 bp proximal
Rr493051	regulatory region 493051			1442 bp proximal
Setdb2	SET domain, bifurcated 2			Intron
				Noncoding-Transcript-Variant
Tssr125903	transcription start site region 125903			1022 bp upstream
Tssr125904	transcription start site region 125904			1397 bp upstream
Tssr129008	transcription start site region 129008			1229 bp downstream
Tssr129009	transcription start site region 129009			1538 bp downstream
Tssr129010	transcription start site region 129010			1553 bp downstream
Tssr129011	transcription start site region 129011			1752 bp downstream
Tssr129012	transcription start site region 129012			1759 bp downstream
Tssr129013	transcription start site region 129013			1761 bp downstream