rs36362391 SNP Detail

Summary

• ID
  rs36362391
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTATCA AGCAGATGAA
  GGAGATACAC TCGGTGGCCT TATCTCAGCA TTAGAAGTTA AGACGGAGAA CTTTGTAAGG
  AAACCAGAAA AGCCAAGGAA GTCTAAAGAA CAGCGGAGTC AGTGGGACCA TGCTCAGCTT
  GGCAGCAGCC CTGGCTCTTA CAAAAACACA GATACCTGTA GAATGAGCAG GCATCCTCAC
  S
  GACTGAGCCT GGGGGCCTAG CTGTAGCATG CAGCCCCAAG GCTAAATGAC AGCATCTCCG
  TTATTGTTGG GAGCGTGAGG ACTCCAGGAA ATGGGTGGAT GACTGTTGTC TGAAGGGATC
  CAGCCTGTTG GAAGGACTGA CCGCTTCCTG AAGGATTCAC TACTCTTCTT TACAGGAAAT
  GTTTAAATAA TTGAACTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533206	NES14628255	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36362391					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533206	NES14628255	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413455 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	1995 bp upstream
Rr404213	regulatory region 404213	667 bp upstream
Rr495436	regulatory region 495436	610 bp distal
Tssr4478	transcription start site region 4478	1063 bp downstream
Tssr126621	transcription start site region 126621	1037 bp downstream
Tssr126622	transcription start site region 126622	1007 bp downstream
Tssr126623	transcription start site region 126623	574 bp upstream
Tssr126624	transcription start site region 126624	618 bp upstream
Tssr126625	transcription start site region 126625	777 bp upstream
Tssr126626	transcription start site region 126626	792 bp upstream
Tssr126627	transcription start site region 126627	808 bp upstream
Tssr126628	transcription start site region 126628	1119 bp upstream
Tssr126629	transcription start site region 126629	1794 bp upstream
Tssr126630	transcription start site region 126630	1833 bp upstream
Tssr129768	transcription start site region 129768	1208 bp upstream
Tssr129769	transcription start site region 129769	565 bp downstream
Tssr129770	transcription start site region 129770	634 bp downstream