rs36362542 SNP Detail

Summary

• ID
  rs36362542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:91906216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTCTCT AGGGTAGAAT
  ACTTTGCATG TTGGAAAATT TTCCAAGAAA CATTCGTAAA CACGTTTCAT ATATTTCTTG
  AAAAATTAAT TTGAAGTCTT TGACTCTGGC CTATGGAAAT GTGCCAGTTG CTTGGGCTGC
  TAATATAGAT TTTGTGGTCA CCCCGCCCCC TCAATTCTAG GAAACTTCCC TTGTGTAGGG
  Y
  CATACCTGAA GTTTATCTGA GGTACCATCT ATCTTGAGTG GCCTAGCGCT AACTACTGTA
  TTACAAACAT GTCTTCCTTC CCTACCTTAA ACACAGTATG TTTTCATGTG ACTAAGTCTT
  TTGCTCCTTT CATTACTCTA TAGTTCCCCT GTTTTCTTCT TCCCCTCTTC CTTGTGTCTT
  CTTTTTCCAT TCATGGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50893811	NES14220736	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36362542					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50893811	NES14220736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:91906216 () rs orientation: forward

Symbol	Name	Function Class
D10Mit176	DNA segment, Chr 10, Massachusetts Institute of Technology 176	806 bp distal
Gm55043	predicted gene, 55043	1307 bp downstream
Mir135a-2	microRNA 135a-2	1732 bp downstream
Tssr98922	transcription start site region 98922	1744 bp downstream