rs36362883 SNP Detail

Summary

• ID
  rs36362883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCCTCT CCTCAGCAAA
  CCAGCCACAT TCTACATTGG ACTTTTGGAT TCAGGGTGGA TTTTCCTTCC GAGAAGAACA
  CATGCATAGC TCCCTGGCTT TCTCATTCTA ATCTTGAAGT ATAATCACTT CTGAATCCAG
  TCTGTACTTT AACTTTGCCA GGATGTGGAA GCAAGAGCAT CAAGCCAACA GGATGACTAC
  R
  CAGTCCTGTT ACGTATCCTT CAGCAGCCCT AACCCTGGCC TTAAACAAAA TCCCTTGACA
  ACCCTTTTAA GTTCCTCTGT GTGTCTGTCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTATGT ATAGTTGCCA GCTTAGAAAT ATAAAATCCA TTATTTAAAA
  TTAGTTTTCG GGCAGCTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50908922	NES13484803	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36362883					SNP	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908922	NES13484803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841137 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	217 bp upstream
Rr407423	regulatory region 407423	584 bp distal
Rr407424	regulatory region 407424	838 bp distal
Tssr5799	transcription start site region 5799	180 bp upstream