rs36363988 SNP Detail

Summary

• ID
  rs36363988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:129199674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGCAGCA TCTATTCTGG
  GAAGCTTGAA ACCTGGGAAG TCCTGGTGGA GCACTTCAGG AAAGCAGAAA TGTTCTTTTC
  TCTGGCTGCT GTTTCTCAAG TTACTTAAAT GAAACCCATT GCCTATTGAT CTATATATCT
  GTATCTATAT CTATATCTAT ATCTATATCT ATATCTATAT CTATATCTAT CACAATAAAA
  Y
  ATAATGGACC CTTTTCTACT TGGGGTAACA GATCATGTGG TCTTGAATTT TGGGAGATAC
  TGTGAGATCT GGATGACAGC TGATGCATTT TTAAGACAAT GATCTAAAGA GAGGCATAAC
  CCTGAATGTG AGCACAGAAC TCCCTAGGAC AATAGTGATT ACTGGGTTCA AGGGCTAATG
  CTTCCCACTC TCAGAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51361766	NES14480921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36363988					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361766	NES14480921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:129199674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi699	CpG island 699	1180 bp proximal
Rr28456	regulatory region 28456	1126 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B	1365 bp upstream
Tssr8548	transcription start site region 8548	1499 bp upstream
Tssr8549	transcription start site region 8549	1534 bp upstream
Tssr8550	transcription start site region 8550	1554 bp upstream