rs36364325 SNP Detail

Summary

• ID
  rs36364325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGCCA TGCAGCCCAA
  GGAAACAGGG AAGGCCTCAC TAATCGGAGA AGCTGAGGTA GATCAGACAT TTGGTCTCTT
  TAGGCTTAAA ATAAGCCTGT GTTTTATGCA CAAAGAAGCA CACAATGAGA GATATTTAGT
  TTTTATTTCA TAAAATCAAA GTATTCAATA AATAGTAGGA GGTGTGTCGA CTCAGAGGTA
  R
  TAAGACGAAT TGGGCATAAC CTGAAAGACA ATGCAGTTAA TTATCAAGAG TTCAACACTG
  AGGCTGGGGA GTGTTCCAGT GATATCAGCT ACCATACCCA GAGCCTTTAG AACCCTCCAA
  GAAAAATGTA ATGGCCTCAT GATATAAGAG TCAAGCAAAG ACACCGCAGG GACTTGAACC
  CCGTCCTGGA AACCAGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577514	NES13649152	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36364325					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577514	NES13649152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845793 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	159 bp downstream
Rr543160	regulatory region 543160	1347 bp distal
Rr543161	regulatory region 543161	1689 bp proximal
Tssr5415	transcription start site region 5415	1069 bp downstream
Tssr5416	transcription start site region 5416	1545 bp downstream
Tssr157645	transcription start site region 157645	588 bp downstream
Tssr157646	transcription start site region 157646	618 bp downstream
Tssr157647	transcription start site region 157647	780 bp downstream
Tssr157648	transcription start site region 157648	946 bp downstream
Tssr157649	transcription start site region 157649	1046 bp downstream
Tssr157650	transcription start site region 157650	1105 bp downstream
Tssr157651	transcription start site region 157651	1159 bp downstream
Tssr157652	transcription start site region 157652	1296 bp downstream
Tssr157653	transcription start site region 157653	1413 bp downstream
Tssr157654	transcription start site region 157654	1456 bp downstream
Tssr157655	transcription start site region 157655	1493 bp downstream
Tssr157656	transcription start site region 157656	1523 bp downstream
Tssr157657	transcription start site region 157657	1645 bp downstream
Tssr157658	transcription start site region 157658	1697 bp downstream
Tssr157659	transcription start site region 157659	1800 bp downstream
Tssr157660	transcription start site region 157660	1953 bp downstream
Tssr157661	transcription start site region 157661	1974 bp downstream