rs36364630 SNP Detail

Summary

• ID
  rs36364630
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT ACAGTAAAGC ATGGAGACCC
  K
  TTTTTCTTTT GAGAGTGCTT GAGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50944573	NES14144916	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36364630					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944573	NES14144916	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921134 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1118 bp distal
Gm55458	predicted gene, 55458	24 bp upstream
Mir677	microRNA 677	21 bp upstream
Rr402340	regulatory region 402340	1953 bp downstream
Rr441097	regulatory region 441097	1982 bp distal
Rr441098	regulatory region 441098	1204 bp proximal
Rr441099	regulatory region 441099	1304 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1049 bp downstream
Tssr96319	transcription start site region 96319	1956 bp downstream
Tssr96320	transcription start site region 96320	1327 bp downstream
Tssr96321	transcription start site region 96321	1280 bp downstream
Tssr96322	transcription start site region 96322	245 bp upstream
Tssr96323	transcription start site region 96323	766 bp upstream
Tssr96324	transcription start site region 96324	867 bp upstream
Tssr96325	transcription start site region 96325	1027 bp upstream
Tssr96326	transcription start site region 96326	1044 bp upstream
Tssr96327	transcription start site region 96327	1060 bp upstream
Tssr96328	transcription start site region 96328	1107 bp upstream