rs36366501 SNP Detail

Summary

• ID
  rs36366501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56678574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGAAAA TGGAAGGATG
  TATTTCAAGT GAGCTTAGCA CAAAATACAA GGCTCAGTTT GTAGCTCCTG TTGGTTTATA
  TTCAGAGCAA ACAGAGCAGC GGGGCACGGA GCCATCAGAG TAACAGATGC TTAACTTATC
  TGAAGAGTGA CTGGGTGCTG CTAGGCATGA ATGGCAGGAT GAAGAAAGCA GCTGTGGATA
  Y
  GTGGGTAGAT GGAGCCATGA TCACCGCAAG AACACCTGCA GTGAGGTCAA TACGCCAAGG
  TCAACTCCGC TATATCTGCC AAAATGGCTG CATGAGGATC GCCTTGTGCA TCCATCGAGT
  GGTTACTAGC CCTTACTTCC TTGGTCTAGT TAGAAGACAG TGTGAAATGA GACGATTTCA
  CAAATAAATA AAGGAGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254030	NES14273698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36366501					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254030	NES14273698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56678574 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	94 bp upstream
Hsfy2	heat shock transcription factor, Y-linked 2	1980 bp upstream
Tssr11733	transcription start site region 11733	2000 bp upstream
Tssr11734	transcription start site region 11734	1986 bp upstream
Tssr11735	transcription start site region 11735	1966 bp upstream
Tssr11736	transcription start site region 11736	1955 bp upstream
Tssr11737	transcription start site region 11737	1935 bp upstream