rs36366997 SNP Detail

Summary

• ID
  rs36366997
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAATAGTGA GGCTGGCCCT TGAGCTACAC TAGCTAGAGT
  CTCAGTTCTG TCTCAAGGCT ACCTGCAAGA GGCTAGCCAA CCATCCCTGC AAGAACCACC
  W
  CATTACTTCC CAAGAGACAT CATTTCAGCA TTCTGTTAGT ATTGCACTTG CTAGAAGTTT
  GTTGCTCATA TCAAGCCCTT AGGTGGAGTG AACAAAAGGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605174	NES13645693	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	A	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36366997					SNP	T	T	A	T	A	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605174	NES13645693	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963298 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	836 bp downstream
Rr543966	regulatory region 543966	1932 bp distal
Rr543967	regulatory region 543967	1352 bp distal
Rr543968	regulatory region 543968	1363 bp proximal
Tssr155006	transcription start site region 155006	1715 bp downstream
Tssr155007	transcription start site region 155007	1642 bp downstream
Tssr155008	transcription start site region 155008	1351 bp downstream
Tssr155009	transcription start site region 155009	1005 bp downstream
Tssr155010	transcription start site region 155010	817 bp downstream
Tssr158137	transcription start site region 158137	1697 bp upstream
Tssr158138	transcription start site region 158138	1608 bp upstream
Tssr158139	transcription start site region 158139	1315 bp upstream
Tssr158140	transcription start site region 158140	1094 bp upstream
Tssr158141	transcription start site region 158141	1066 bp upstream
Tssr158142	transcription start site region 158142	1041 bp upstream
Tssr158143	transcription start site region 158143	975 bp upstream
Tssr158144	transcription start site region 158144	837 bp upstream