rs36367262 SNP Detail

Summary

• ID
  rs36367262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8930104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTGTTC CGAGCTCTAA
  GGGCTCTCCG TCTCCACAGA AGGGTGTGAG GATGTCTGCC TGTTACCTAC TTGTCCTTTG
  GATGCCAGGG AATTGGTCCC AGGGCCCAGA GAATGCTAGG CAAGTGCTCT ACTATTGAGC
  TACCTACATC CTCAGCCTTA ACTTTCATTT AGGCATTCTA GGAAATGTTA GCTAACAGGC
  W
  AAGATGTACT CCAACAAATG CTGCTTGTGT TGGCACATCC CTACCTTTAA TCTCAGCAAC
  GGGGAAGCAA GACTGCAATT CAAGCTCAGT GGTGTATGTA TACAGACTGC TGCCTCAGGA
  TTAACAATCA ACCTTAGCAA CTGCCCCTGC TTTTAAGCGT ACTGCAGTAT TCTCTTTTTT
  GGTTTGGTCT GCTCTTTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50609138	NES13644049	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36367262					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609138	NES13644049	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8930104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	720 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	445 bp downstream
Rr359578	regulatory region 359578	1104 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	826 bp upstream
Tssr154900	transcription start site region 154900	655 bp downstream
Tssr154901	transcription start site region 154901	1086 bp upstream
Tssr154902	transcription start site region 154902	1121 bp upstream
Tssr154903	transcription start site region 154903	1146 bp upstream
Tssr154904	transcription start site region 154904	1237 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	1107 bp upstream