rs36367857 SNP Detail

Summary

• ID
  rs36367857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATCATT GAGAGAGTGG
  GAGAGGGATT GGTTTCAAAT GGGGTGAGAG AGAGAGGGAG GTGGGATAGG CATGTTCGCC
  CATGAAAATC CCTTACAGTT TGTACATCAC ACCTCTTCCT TTGTTGTTTC ACTGGAGATG
  AAGAATTTGT TTTTTCCCAG ATGAAAGTAT GTAGGCTCCT GGGTTTTGCT TTAAGCAACT
  R
  GAGTCAGACA AAAGAGTTCA GCCAGGAAGC TGACCTTCGC TCCCTATCTG TGATCAGAAG
  GGCTTAAGTA GCCCAGGGCC TGCAGAGAGA GACCCAGGGT GGGAAGCAGA ATGCTCCTAG
  AGAGGAGGAA GTGGAAGGTG GCTTCTAGAT TTCACTGTGA CCTGTTGTCA GGTGATTTTC
  AGGGGGAGGA GACATTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533194	NES14628259	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36367857					SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533194	NES14628259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413983 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	1467 bp upstream
Rr404213	regulatory region 404213	139 bp upstream
Rr495436	regulatory region 495436	1138 bp distal
Tssr4478	transcription start site region 4478	1591 bp downstream
Tssr126621	transcription start site region 126621	1565 bp downstream
Tssr126622	transcription start site region 126622	1535 bp downstream
Tssr126623	transcription start site region 126623	46 bp upstream
Tssr126624	transcription start site region 126624	90 bp upstream
Tssr126625	transcription start site region 126625	249 bp upstream
Tssr126626	transcription start site region 126626	264 bp upstream
Tssr126627	transcription start site region 126627	280 bp upstream
Tssr126628	transcription start site region 126628	591 bp upstream
Tssr126629	transcription start site region 126629	1266 bp upstream
Tssr126630	transcription start site region 126630	1305 bp upstream
Tssr129768	transcription start site region 129768	1736 bp upstream
Tssr129769	transcription start site region 129769	37 bp downstream
Tssr129770	transcription start site region 129770	106 bp downstream
Tssr129771	transcription start site region 129771	1858 bp downstream