rs36368002 SNP Detail

Summary

• ID
  rs36368002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66593232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGCTGC TTTTTGCATT
  TCTCCCTTTT GAGAAAGTAC TAATTGCTCA TAGAAATCAG GATTTCTCGA TTGATGTGCT
  ACGTTTAATA CATTACACCC TAAAGAGTGT TTTGTGAATA TTTCTGAAAA ATATTTGACC
  CTGGAACTCA TTAAAACATG ATACATTATG AAATCTCTTA GGGCCTCTGA TTTCACTCAG
  Y
  CAATACAGAA ATTTATCCAA AAATAGGTTT AAGAGCTTGC TTTACTATGT ACTTAAAGTT
  CGAGTTCACT GGAAGTCTAA ACAGCAGATA TCTTGGTTAC AAAACAGACC AGCTTTTAAA
  TTTGTATTCA TAATTTTTGG TCATAGTCTT GAGGGGTACC AGAACAACCA AAATTGGTCC
  TTGAAATATT TTTTAAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50450314	NES13440737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36368002					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450314	NES13440737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66593232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	772 bp distal
Cpgi10161	CpG island 10161	693 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	1441 bp downstream
Rr539737	regulatory region 539737	1558 bp distal
Rr539738	regulatory region 539738	1749 bp distal
Rr539739	regulatory region 539739	1695 bp distal
Rr539740	regulatory region 539740	182 bp distal
Tssr151705	transcription start site region 151705	1557 bp downstream