rs36368289 SNP Detail

Summary

• ID
  rs36368289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36269209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTGCTA GCAATTTTTT
  CTCATAAATG GTAGAGGAGG GTGCAATGCT GAAATGGGTT GGAGCCTTAG CCCTGGGCTA
  TTTTCTCACC CTCAGAAGAA CTTGAGACTG AAGTAAGTAA CACTTCAGAT TTTTACATGG
  TTTTCTTACT TGAGAAGAGT TATGACTTTT GGCAGTGCAT AGTTTTCTCA TTTTAATGAG
  Y
  GGAGTCTAGT CTCAGATGGC AAATGAGGCT CCTAAGAACC TAGCATGTGG ACATCACTGC
  CCAAACGTTA GGCATCTCCT GAGTGCATTT CCAGAAAGCA CTTTCTTTTT AACTGAATTC
  AAGGAAATGA CCCCATGCCA AGCTTCTCAG GTGGGACATG TTACTGTAAT TTGAATGATG
  TCATCACAGT TTTAAGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978563	NES14418269	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss137628430	ENSMUSSNP2149837	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36368289					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978563	NES14418269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36269209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			within coordinates
Lrrc72	leucine rich repeat containing 72			Intron
				Noncoding-Transcript-Variant
Tssr116139	transcription start site region 116139			1023 bp upstream
Tssr116140	transcription start site region 116140			1005 bp upstream