rs36369046 SNP Detail

Summary

• ID
  rs36369046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:45505845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTTCTC TGTAGCCTGG
  CTGTCCTGCA ACTCACTTTG TAGACCAGGC TGACCTGGAA CTCAGAAATC CGCCTGCCTC
  CGCCTCCCGA GTGCTGGGAT TAAAGGCGTG CGCCACCACC CCTGGCACAG TCATGCAGTT
  TAAAATAGCT GACATTCGCA AAACTATCCA TCTGTGACAG CCAACTCTTT GAAGCTTCTC
  Y
  CAGCGTGCTC CTTTTGAATT TTCACAGTGC TATATTGTGC CTGTCAGCAC TGTGCACTGT
  TGAAGGAGGG CATCTTGTTA CCTTTAATAA CTCTGCAGTC TTTGGATGAA CCACTTAGTT
  AGGATTTCAT TGCTGTGAAG AGACACAGTG ACCACGGCAG CTCTTCTAAC AGAAAGCGTT
  TCCTTGGGGC TAGCTTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50533731	NES14088159	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36369046					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50533731	NES14088159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:45505845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20295	CpG island 20295	1168 bp distal
Fat1	FAT atypical cadherin 1	551 bp downstream
Rr662830	regulatory region 662830	395 bp distal
Tssr77124	transcription start site region 77124	1875 bp downstream
Tssr77125	transcription start site region 77125	1258 bp downstream
Tssr77126	transcription start site region 77126	1151 bp downstream