rs36369241 SNP Detail

Summary

• ID
  rs36369241
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97598850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGAAAGC GTCCGCAGGC TGGGCCAGTG TCGCAAAGAC
  TGCTGGGTTA CCTTTGCTGG GACAGGAATA TGGCTGCACA GCGGCAATCT CCTAAGTGCT
  K
  TGTTACAGAG GCTCGGGAAA GAAAGGAGTC GTCAGAGAAT GAAGGGAAAT TAGACCAAGA
  CAAAAGAGTG TCCTACATTA CAGCCCAGCC CCCTGTCCTT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50996630	NES13919767	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36369241					SNP	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996630	NES13919767	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97598850 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66506	predicted gene, 66506			375 bp downstream
Mir7225	microRNA 7225			972 bp upstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)			Intron
				Noncoding-Transcript-Variant
Tssr30803	transcription start site region 30803			695 bp downstream