rs36369303 SNP Detail

Summary

• ID
  rs36369303
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55238655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAGAGAG AGATAGATGG
  TGTGGCCTGC TAGAGCATTA GCAACCCAGA CTCTGGGCTT TTCACCATAG GTCAGCATAT
  CACCTTTTGG AGTCTCTGAT GCCCTTGAGG ATAAAGTTAA CTAATGAAGC TAAGTTAAGT
  CACTGATGGC GCAATCATGC CAGTACTTAA ACTCACTTGG GTCATCCTGT TCTGACCCTG
  M
  GTGACTTTGA GTTAGGTCTA TGTAAAGACG GCATGGGCAG TCAGTGGCAG GACTCCTGCT
  CAGCCAAAGC CTCCTGCTGG AACTCAGCTA ACTGGCCAAC GTCTCCAAAA GCATGAGTTT
  ACATCTAGGT CAAAAGTGGT CATAACCAAG GCTATCCCTA ATACAGCCCC TGTAGGTATC
  CGAGTATCTG GTCCTATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221539	NES14297460	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	C	A	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36369303					SNP	C	A	A	A	C	A	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221539	NES14297460	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55238655 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	1643 bp upstream
Rr363563	regulatory region 363563	1545 bp proximal
Tssr5558	transcription start site region 5558	1611 bp upstream
Tssr157068	transcription start site region 157068	1675 bp upstream
Tssr157069	transcription start site region 157069	1702 bp upstream
Tssr157070	transcription start site region 157070	1729 bp upstream