rs36370576 SNP Detail

Summary

• ID
  rs36370576
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109709378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCAGT GGTTGGGTGG
  GCCCAAGGAG GAGCATCTCT GGATGATGCA GTCATTGCCT CCTCGCTTCT GGAAGGCATC
  GTCTCTGGGA GGGTGGTGTG GTATATGCGC AGGGTCTCAG CATCTCCCTA TCTCCAGCTT
  ACAAAGGAGA GATAGAGTAA GCAGAGTTCT GCACCCACTT CTGCCCCGAG TCAGCTCCTC
  K
  CTACCTGGGT CTCAAGGTTG TCTGGGAAGG CTTTAGATAT TCTTGGAAGG TGAAAGGGTG
  GTAGATTGCA CTGGGGAGGT GATGGAATAA TTGCTTTCAC GTGGTGGAGG GTGGCTCCTC
  ACTGAATGGG GAGTTATAAT CTCTGAGGGG CTCCAGGATG GTTCTTCTGG AAACTCAGCC
  ATCGGCCTCG TTCTGAGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss51052575	NES14374024	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs36370576					SNP	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052575	NES14374024	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109709378 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	214 bp downstream
Mir369	microRNA 369	474 bp upstream
Mir409	microRNA 409	214 bp upstream
Mir410	microRNA 410	771 bp upstream
Mir412	microRNA 412	345 bp upstream
Mir541	microRNA 541	446 bp downstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	214 bp proximal
Mirg	miRNA containing gene	within coordinates
Tssr115183	transcription start site region 115183	1292 bp downstream
Tssr115184	transcription start site region 115184	843 bp upstream
Tssr117762	transcription start site region 117762	1322 bp upstream