rs36371512 SNP Detail

Summary

• ID
  rs36371512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133987354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTTGAGA GGGAAGAATT TGGGGGGGGG GAGACTTTTC
  TGAAAAAGAA GAACCCTGTC TTGCCAAGAG ATACCTAAAG CAGGATCTAT CTTAGGCTGT
  R
  GCTGGGTTGA TATTTTACTA GACTTTGTCC TGGATCTTAT ATTGCTTTAT TATGATGAAT
  TTTTAATATT CCTAGAATTT AGTCTCATCC CTAGCATCTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51373662	NES14471789	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36371512					SNP	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373662	NES14471789	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133987354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	1302 bp proximal
Gm19497	predicted gene, 19497	424 bp downstream
Gm57140	predicted gene, 57140	1432 bp upstream
Rr1740	regulatory region 1740	578 bp upstream
Rr12446	regulatory region 12446	47 bp proximal
Tssr8846	transcription start site region 8846	1456 bp upstream
Tssr8847	transcription start site region 8847	1479 bp upstream
Tssr8848	transcription start site region 8848	1520 bp upstream
Tssr13763	transcription start site region 13763	1195 bp downstream
Tssr13764	transcription start site region 13764	1246 bp downstream
Tssr13765	transcription start site region 13765	1294 bp downstream