rs36371620 SNP Detail

Summary

• ID
  rs36371620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATAAG CCTTTCTATA
  CTATAGGCCT GGTACAGCGA AAGCACTCAA GCTTAACAGA CCATCAGTGG CTAGCTACCC
  ATTGGCCAGT GGGACAGCAT TACAGAAGGA CCAAACACAG AGCTGGACAT CTGTGACCCT
  GCCTCAGGCC TAGGTTGTCT GCTACCTGAT TATAAGGTTT TAGTGTCCTC TTGAATAGGG
  Y
  TCATTGTCCT CTCCTGAGAA GTAAAATCTT GCCTGGCCTA CAGAGCCTCT TATCTCTATG
  ATGATACCTT TGTGGTCTTA ATGATTTAGT AACAGTGTAG TGATGCGCAC CTTCCACATG
  GATAGAAGGA AGAAGATAGG CTGAGTCATG AGGCAACAGC CTCTGGTGTC TCACTAGGGG
  CCAGTAGGGC TGCCTGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221533	NES14297438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36371620					SNP	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221533	NES14297438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239615 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	683 bp upstream
Rr363563	regulatory region 363563	585 bp proximal
Rr363564	regulatory region 363564	1785 bp proximal
Tssr5558	transcription start site region 5558	651 bp upstream
Tssr157068	transcription start site region 157068	715 bp upstream
Tssr157069	transcription start site region 157069	742 bp upstream
Tssr157070	transcription start site region 157070	769 bp upstream