rs36372213 SNP Detail

Summary

• ID
  rs36372213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105288389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAGCCT ATCTCTATCA
  TTCATACCTG TGGGGATGAG TCCGTCACCA GAGCCCCCAT AGCCACCAGA CACAATGCTA
  GTTTCATTGA GGTTGGGTCC TGACACCATC ACCTGCTGGA GGTCCTATAG GTCAGAGAAG
  AGGGGGGCAC CTCAGGAACA CAGGGATGGA TGAAACATTT TGGGGACGGA GACAGTGCAT
  R
  GTAAAGTCTG TACAGAACCA TAAAGAAGAT TTGAAAAGTA TGAAGGAGTT TAGTTAACTG
  AAGGCTACCG GGACAGGGGA AATTAAAGGT TTATAAGTCA GGAATGTATA ACAAAACAAT
  GAGAAGAATC AAACAGAAGC ACCTGCTCCA GCCCATCGTC TTCAGGAAGC TGCCCAGCTT
  CGCCATTTCC GTGGATGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51920952	NES14946613	PERLEGEN	MM_PANEL2	f	SNP	A	A		A	G	A	A
ss322370114	CHEV_7_112787696	CHEVERUD	SCREENING_POP	f	SNP			A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36372213					SNP	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920952	NES14946613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105288389 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	902 bp proximal
Gm45799	predicted gene 45799	1370 bp upstream
Rr400513	regulatory region 400513	1066 bp upstream
Rr652793	regulatory region 652793	384 bp proximal
Rr652794	regulatory region 652794	885 bp proximal
Rr652795	regulatory region 652795	1124 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	874 bp upstream
Tssr2358	transcription start site region 2358	1234 bp upstream
Tssr68382	transcription start site region 68382	1281 bp upstream
Tssr68383	transcription start site region 68383	1340 bp upstream
Tssr68384	transcription start site region 68384	1601 bp upstream
Tssr68385	transcription start site region 68385	1814 bp upstream
Tssr68386	transcription start site region 68386	1870 bp upstream
Tssr74083	transcription start site region 74083	1135 bp downstream