rs36373276 SNP Detail

Summary

• ID
  rs36373276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24215370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTTCCC AACCCCTCTA
  AATGAGTAGG CTAGGCACAA GACCACAGAA AGGGAGCCCG GGTAAGGTCC AATCAGAAAC
  TCTCCGGCAA GCTGAGAGAG GCCAAAGTAA GAAAGACTTT ACTGAAATAA CAAACAGGCA
  AGGACTTGGG AGATATCTCA GTGGGTAACG CTTTTGCCTC AGAAGTCCGA GCACCAGACT
  Y
  TGGAGCCTGG AACTCCTGCG ACAGAGAAGC GTATCTGGTA GCTCCCTGGA ATGTCAGCAC
  GAGGAGAAGA GCCCCAGTGA GCTCCGGGTT CAATGAGAGA CCATCCCTCC TTAAATCAAG
  TAGCGAATTA TGGAAGAAGA CACCCAATGC CAATTTTGAG CCTCTTCAGG GTCGTATGTA
  TGTACCCCAT CCCTCAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50928135	NES13475696	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36373276					SNP	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928135	NES13475696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24215370 () rs orientation: forward

Symbol	Name	Function Class
Col9a1	collagen, type IX, alpha 1	1321 bp upstream
Rr408587	regulatory region 408587	969 bp distal
Tssr21	transcription start site region 21	1364 bp upstream
Tssr6103	transcription start site region 6103	1400 bp upstream