rs36374719 SNP Detail

Summary

• ID
  rs36374719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26300521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTACT CTCTGAATGC
  TGTAAACTCA TCCAGTAAAA AATCTGATCT CATCCTGACA CACAGAAGCA AAACCTACGT
  TAAAACCAGT AGCTCTATTA TTAGATCTAC TCTGGTGGCC TTATCTTCAA CAACAGTTTA
  CACACTGTCC ATTACCCCAA GTTCAGATGA AACATCTCGT TGCTCCAGCT CCTACAGTAA
  Y
  GGAGATAAGA CACTAATAGG ATCTGATCCA CTGATCCACT GATCCGGGAT CCAGGCTTAG
  CAGTGTATCT GTGCTGAGCG TCTTGGGCAG ATCACTGAAA CCTTCAGGCC CCAGGTTCTT
  CCAAAGTGAG TCAACTAATC AAAAAGCCCA GCCTTCTCTT TATCTAGTTA GCTGCTGTAG
  ACCAGTCCGT CCTTCAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50513595	NES14089069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36374719					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50513595	NES14089069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26300521 () rs orientation: forward

Symbol	Name	Function Class
Rr180623	regulatory region 180623	1080 bp proximal
Rr189143	regulatory region 189143	1722 bp distal
Rr189144	regulatory region 189144	1480 bp proximal
Rr366752	regulatory region 366752	1957 bp downstream
Star	steroidogenic acute regulatory protein	within coordinates
Tssr76716	transcription start site region 76716	1980 bp downstream
Tssr76717	transcription start site region 76717	1832 bp downstream
Tssr76718	transcription start site region 76718	619 bp downstream