rs36376873 SNP Detail

Summary

• ID
  rs36376873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:101692176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGCTGT TTCTGTAAAT
  AATATGACTT GTTCTGGAAT GTTTCACTTA AGATTGCTGT AATCCTCAGA GTTGTTAATT
  TGGTCAGTGA CCTTGAGCTG ATCAACCAGA AACTCAGATG TTGAAATCAC TGCAGTCTCT
  AGAGCACCAG TTGCCAGAAC AATTTCACCG TAGTGCTAGG AAACAGTGCC CCATGGGCTA
  Y
  CAAGTCTCTA CATCCCTTTA CAACAAAGTA GGCTACATAG CTGGACACTG AAGTCACAGC
  AAGCTGTAAG CTTGGTGTGT GTTTAAGAGC ACAGAGGCCT CCTTGGGCAT CAGACATGCA
  CATGATGCAC AGACTGACAT GCAGACAACA TCCAAACATG CAAAATAAAG TCATATTTAA
  ATTTAAAATT CTAATTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142147	NES14336215	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36376873					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142147	NES14336215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:101692176 () rs orientation: forward

Symbol	Name	Function Class
Gm19010	predicted gene, 19010	1563 bp downstream
Gm36475	predicted gene, 36475	within coordinates
Gm47533	predicted gene, 47533	within coordinates
Rr485081	regulatory region 485081	1966 bp distal
Rr485082	regulatory region 485082	1022 bp proximal
Tssr4154	transcription start site region 4154	309 bp upstream