rs36376880 SNP Detail

Summary

• ID
  rs36376880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37524267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGATT TTAGATCAGT
  GTGTTTTAGA GAAGATCTTA CTATGTAGCC AAGCTGGCCT CAAGCTTTGG CTTCTAACCC
  ACCCCCAATT GCTGGGATGC TGCCTCATCA TGGTCAAAAT ACAATTCTGA TTGTATGGAA
  GAAGAAGCAG TCTTAAAACC ATATGGTGTT TAAGGCAGGA CCTGTTCTTT CAGGTGTGTG
  Y
  CTGTGGCTTT ATCTACGTAT GTGTTTTTTT TCTATTCGAT GTATTATGTT CATGTGTGAT
  ATGAATGGCT TCTCATCGTC GGTGCTTTCA GGTTTTAATA AATTTAATTT GAAGTTGTCC
  GATGTTTGCA TCGCTTAGAC CAACCCTTCC CTACAGAGCA AAAATAATTT CTAGTTTTCA
  CATTCGTTCT AGTTCCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50794305	NES13548096	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36376880					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50794305	NES13548096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37524267 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	914 bp upstream
Gm59222	predicted gene, 59222	within coordinates
Rr364832	regulatory region 364832	251 bp distal
Rr364833	regulatory region 364833	1934 bp proximal
Tssr156225	transcription start site region 156225	790 bp upstream
Tssr156226	transcription start site region 156226	817 bp upstream
Tssr156227	transcription start site region 156227	978 bp upstream
Tssr156228	transcription start site region 156228	1176 bp upstream