rs36378166 SNP Detail

Summary

• ID
  rs36378166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72344216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGAGAAA AGGGAACACA
  TGTATGCTGT TGGTGGAATG TGAATAAGTG TGGCCATTAT AGAATACTAG ACTAAGGTCC
  CCCAGAGTTA AAATAGAACT ACTGCCTCCT CCCCCCCCAC CGTAATCTAT ATATCCACAG
  GATATGGAAT CCGCATGCGG AAGGCCTCTG AATGCACACG TTAGTTGCAG CTCCATTTAC
  R
  GTAGTCAAGT CCTGGTTATA TCCTGTGTCC ATCAGTGAAT AAATGGACAG AAGAATAAGA
  TTCAACCACA GGGAAAAACA AAGTCTTACC ATTTCTGACA GTGTGGATGG AACTGGAGAG
  ATCAGCTGAA ATAATAATGG TGCTACAGAT ATTGCTCTGC CAGAGTGGGG CTGGGGAGAT
  GGCTCAACGG TTTGGAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50742800	NES14240582	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36378166					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50742800	NES14240582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72344216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	1084 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	1060 bp upstream
Rr401506	regulatory region 401506	1444 bp upstream
Rr682742	regulatory region 682742	1111 bp proximal
Rr682743	regulatory region 682743	1612 bp proximal
Tssr85997	transcription start site region 85997	1051 bp upstream
Tssr85998	transcription start site region 85998	1585 bp upstream
Tssr85999	transcription start site region 85999	1600 bp upstream
Tssr86000	transcription start site region 86000	1645 bp upstream
Tssr86001	transcription start site region 86001	1675 bp upstream
Tssr86002	transcription start site region 86002	1909 bp upstream