rs36379661 SNP Detail

Summary

• ID
  rs36379661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99166051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTATTGAG TTCTCTGTAA GTCATGTGAA AGGAAGTCGT
  GTGATAACAT TTCCTGAGAA TTCTAGACAT TTGATTAAGA AGTTATAAAT CTTAGAGTCT
  R
  ACTTGTCACA AGCACAGGGC GATTACACCC AGGGCTGTCA AGATTAAGTA AACTTCTCTT
  GTTCTCTTAC AGGTCTTTCT CAGCCTTGTA CCACAGATTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51782539	NES14787146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36379661					SNP	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51782539	NES14787146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99166051 () rs orientation: forward

Symbol	Name	Function Class
Foxp1	forkhead box P1	within coordinates
Rr399787	regulatory region 399787	204 bp downstream
Rr406447	regulatory region 406447	567 bp proximal
Rr635365	regulatory region 635365	within coordinates
Rr635366	regulatory region 635366	883 bp proximal
Rr635367	regulatory region 635367	1987 bp proximal
Tssr57967	transcription start site region 57967	within coordinates